PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 312aa    MW: 35055.4 Da    PI: 8.2103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.41.2e-13236261126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ + +tG C+yG +C++aHg
  XP_011097220.1 236 FKTELCNKWEETGACPYGKNCQYAHG 261
                     79***********************8 PP

2zf-CCCH21.34.9e-07274299126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  XP_011097220.1 274 YKTEVCRMVLAGDICPYGHRCHFRHS 299
                     9**********55**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-18231268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-10232267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375235263IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8235262IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-11236261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-9269304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12269302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188273301IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5273300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQKANISCGG LDATSASAAS PMHFSHSNPF LFPTSPTYVN SVPSFYSSLF QNYSSDSPSD  60
TASFDGGDTD RRLHDASCIL EYQQLYNRYK LCLAQLHDSI EELDALRREN ESLRLSNADL  120
SHRVALLYSR DRLFSEFNRL NVASPSAAAS RAAYPTATQP LTEHNRVERR SAERVPIPKS  180
ISVRSSGYLK ITQPGRDATC HKAVSQTPAA LQRVCIPGSK KEEEALEFDV YNQGMFKTEL  240
CNKWEETGAC PYGKNCQYAH GIKELRPVIR HPRYKTEVCR MVLAGDICPY GHRCHFRHSL  300
TEQERLMAAP PR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21236302470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097220.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N32e-75C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022RMW81e-145A0A022RMW8_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000785831e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-74C3H family protein